PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G215900.1
Common NameB456_004G215900, bHLH064D, LOC105792257
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 686aa    MW: 76641.6 Da    PI: 4.8065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G215900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-14486532455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gorai.004G215900.1 486 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 532
                         7999**********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625482531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-19482550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-19486548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11486531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-15486536No hitNo description
SMARTSM003531.4E-17488537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSACIQTVL CIPILDGVLE LGYTEKVQED  180
LGLVQHVKTF FNDGKAPNPP PPKPALSEHS TSNPAASSDY TRFHSPSIPL VYAAADPPVN  240
ADQGEYNNVD EEEEEEEEDD DDEEGDEEPE SYSAETGRTT QQVPTENTLA VVAAEEPSEL  300
MQLDMSEDIK LGSPDDASNN LDSDFNMLAV SQSGNPTDNQ RRAELFRDES NRRWQMLQEP  360
SCGSLQPLST GPQPVDEMSQ EDTHYSQTVS TILQAQLARW TESPSTVNAA TYSTQSAFAK  420
WTTHSDHHLH SAVVEGTSQW LLKYILFTVP FLHNKYRDEN SPKLRDAAVA AARFRKGTPN  480
EDLSANHVLA ERRRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRKKIQDLET  540
RNKQMEADND RPRSADSMQR NSSSKDQRSG LTTRSSGPDK KKMRIAEATK QKTAEPAPQT  600
AETSVEVSII ESDALLELQC GYREGLLLDI MQMLREKLRI EITAVQSSLN NGLFTAELRA  660
KVKDNMNGKK VSIMEVKRAI NQIIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-2291929193Transcription factor MYC3
4rs9_A2e-2291929193Transcription factor MYC3
4rqw_B2e-2291929193Transcription factor MYC3
4rqw_A2e-2291929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490495ERRRRE
2491496RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988700.0KP698870.1 Gossypium raimondii basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476197.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2R1W10.0A0A0D2R1W1_G
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-94bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yan Q, et al.
    The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
    PLoS ONE, 2015. 10(5): p. e0126558
    [PMID:25992947]